StructSure Blog

Guides, workflow tips, and updates on PDB processing, antibody structure validation, and computational biology — from the team building StructSure.

Guide

PDB File Cleanup Done Right: Why Manual Protein Structure Preparation Costs You More Than You Think

Manual PDB cleanup is one of the most underestimated sources of error in structural biology workflows. Here's what rigorous protein structure preparation actually looks like — and what "good enough" silently costs you.

September 7, 2026 · 7 min read

Reference

PDB Defect Atlas: Structure Preparation Requirements by Downstream Tool

A comprehensive, verified catalogue of PDB structural defects that break ColabDock, AMBER/tleap, HADDOCK, Rosetta, OpenMM, AutoDock Vina, and PRODIGY — with named check IDs, severity, and fixes.

September 19, 2026 · Reference

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